Lucie Rodriguez - Doctoral Student - Karolinska Institutet

‪Åsa K Björklund‬ - ‪Google Scholar‬

Next Generation Sequencing – main technologies. • Sample prep, DNA libraries and barcoding possiblities. • Bioinformatics support at SciLifeLab. • Answers to  The NGI facilities at SciLifeLab Genomics offer a unique combination of consultative support for The SNP&SEQ Technology Platform at NGI/SciLifeLab Genomics in Uppsala is well equipped with the most Bioinformatic secondary ana Nextflow Small RNA Best Practice analysis pipeline, used at the SciLifeLab NGI. NGI-ChIPseq is a bioinformatics analysis pipeline used for ChIP-seq data  RNA and DNA Quality Control · Data Analysis; Links: SciLife Lab Stockholm · Tools of Science · Bioinformatics Infrastructure for Life Sciences(BILS).

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The SciLifeLab Bioinformatics platform ( NBIS) organizes weekly drop-in sessions in Lund, Göteborg, Linköping, Stockholm, Uppsala, and Umeå. Bioinformatics experts are then available to discuss your bioinformatics needs, free of charge. You can find the upcoming scheduled events on the NBIS events page. The bioinformatics advisors will not perform any hands-on analyses in the PhD projects, but will only provide feedback and advice. The advisory program is aimed directly at PhD students, and is independent of the hands-on bioinformatics project support provided by the bioinformatics platform at SciLifeLab (NBIS).

Postdoc: worm genomics in Stockholm Svenska

Facilitates assembly of … Introduction to Bioinformatics Using NGS Data. Held in Uppsala February 04 - 08, 2019.

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The advisory program is aimed directly at PhD students, and is independent of the hands-on bioinformatics project support provided by the bioinformatics … Bioinformatics 34 (22) 3929-3930 [2018-11-15; online 2018-06-06] Fabien Burki. PubMed DOI Crossref. ST Spot Detector: a web-based application for automatic spot and tissue detection for spatial Transcriptomics image datasets. Wong K, Navarro JF, Bergenstråhle L, Ståhl PL, Lundeberg J. Bioinformatics. All samples, sequenced at the NGI, undergo a series of quality certified checks. Bioinformaticians not only make sure that the raw data to be delivered is of high quality (e.g., Q30, yield, etc), but also that sequences are biologically relevant by checking the absence of contamination and, depending on the specific application, by SciLifeLab is a national resource of unique technologies and expertise available to life scientists, closely intertwined with our community of researchers in areas such as … Project description We are seeking a postdoctoral fellow with a strong background in bioinformatics, especially with a focus on gene regulatory network inference and analysis of gene expression data. Main responsibilities The postdoc will participate in research projects, supervised by Profs.
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The concept of workflows has gained favour in the bioinformatics community, but there is  Much genomic analysis is done in collaboration with SciLife Laboratory, Uppsala.

Professor in Bioinformatics 08-16 10 19 arne.elofsson@dbb.su.se  Apply to one of the open positions at SciLifeLab!
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The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. Introduction to Bioinformatics Using NGS Data. Held in Gothenburg May 15-19, 2017.